FIGURE 1. Example compound propagation. As described, KNeXT propagates genes by attaching edges between genes and then deleting the compound. KNeXT always retains unique identifiers in compounds, but ...

nxontology is a Python library for representing ontologies using a NetworkX graph. Currently, the main area of functionality is computing similarity measures between pairs of nodes.

Python package to parse OpenEO process graphs from raw JSON into fully traversible networkx graph objects. This package is an evolution of the openeo-pg-parser-python package. from ...