GitHub

Create UMAP dimension reduction example with RNA-seq data

Currently we have a microarray example of UMAP. We should be able to largely copy the microarray example but switch out the dataset and the accompanying wording. Ideally we will use the same dataset ...
GitHub

Mugen-UMAP: UMAP visualization and clustering of mutated genes in single-cell DNA sequencing data.

This Python program provides a comprehensive pipeline for processing ANNOVAR files, converting them into AnnData format, and generating UMAP visualizations along with various summary reports based on ...
Simply Statistics

Biologists, stop putting UMAP plots in your papers

Single-cell RNA sequencing (scRNA-seq) has become one of the most widely used technologies in basic biology. With the rise of scRNA-seq, the use of UMAP has become ubiquitous in publications. While ...
IEEE

A Novel Dimension Reduction Framework Based on UMAP for Improving the Timeliness of Small Samples

Abstract: UMAP (Uniform Manifold Approximation and Projection) is a fantastic non-linear dimension reduction method, having the capability of quickly processing large datasets. However, it is ...
Frontiers

Deciphering cellular heterogeneity and pathway dynamics in urinary samples: a UMAP-Based approach to understanding acute kidney injury

Background: Acute kidney injury (AKI) is characterized by rapid loss of renal function and is associated with severe clinical outcomes. Understanding the cellular heterogeneity in urine samples during ...